The tournament hosts were beaten 3-0 by Ghana, not before the home fans caused play to be halted in the dying stages in Malabo on Thursday.
The Equatorial Guinea fans reportedly hounded the Ghanaian supporters, so much so that some of the latter filtered onto the arena to escape - causing a farcical ending to the contest.
"We have spent today trying to recover from the efforts we put in, in the semi-final," Becker said on Friday.
"We have had massages and a training session to try to help the team to recover for the third place match and to take the pressure off the players."
"It seems everybody thought we would get nowhere in this Africa Cup of Nations because we were the lowest ranked team in the competition," he said.
"Now we are among the top four sides in the competition this year. It's something unbelievable and the reason we are here is because of the players efforts.
"I think yesterday's result was fair. Ghana played a very good game and I think on the field, there was only fair play."
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