The Germany international was withdrawn at half-time of last weekend's 3-0 defeat to Borussia Dortmund at the Allianz Arena after struggling with the complaint.
Neuer's availability for the UEFA Champions League semi-final first-leg at the Bernabeu had been in doubt as a result of the problem.
"I feel very good. I'm assuming that I can play on Wednesday," he told the club's official website.
Neuer was absent for Bayern's 5-1 DFB-Pokal semi-final over Kaiserslautern on Wednesday, and is also likely to sit out Saturday's top-versus-bottom clash with Eintracht Braunschweig in the Bundesliga.
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